Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.15■□□□□ 0.18
CLDN6P56747 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.15■□□□□ 0.18
CLDN6P56747 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CLDN6P56747 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLDN6P56747 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.15■□□□□ 0.18
CLDN6P56747 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLDN6P56747 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLDN6P56747 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLDN6P56747 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLDN6P56747 AC138028.4-201ENST00000564984 1845 ntBASIC16.15■□□□□ 0.18
CLDN6P56747 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.14■□□□□ 0.18
CLDN6P56747 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLDN6P56747 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.14■□□□□ 0.17
CLDN6P56747 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CLDN6P56747 PIN1P1-201ENST00000412108 996 ntBASIC16.14■□□□□ 0.17
CLDN6P56747 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.14■□□□□ 0.17
CLDN6P56747 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.14■□□□□ 0.17
CLDN6P56747 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.14■□□□□ 0.17
CLDN6P56747 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.14■□□□□ 0.17
CLDN6P56747 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.14■□□□□ 0.17
CLDN6P56747 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 AC004233.3-201ENST00000607794 1269 ntBASIC16.14■□□□□ 0.17
CLDN6P56747 AC003101.2-201ENST00000612557 442 ntBASIC16.14■□□□□ 0.17
CLDN6P56747 AC073592.8-201ENST00000624126 511 ntBASIC16.14■□□□□ 0.17
CLDN6P56747 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.14■□□□□ 0.17
CLDN6P56747 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CLDN6P56747 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLDN6P56747 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CLDN6P56747 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLDN6P56747 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.14■□□□□ 0.17
CLDN6P56747 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLDN6P56747 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.13■□□□□ 0.17
CLDN6P56747 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CLDN6P56747 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.13■□□□□ 0.17
CLDN6P56747 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CLDN6P56747 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 MIR346-201ENST00000362234 95 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.13■□□□□ 0.17
CLDN6P56747 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 RNU1-129P-201ENST00000384064 167 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 HLA-V-201ENST00000429037 534 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.13■□□□□ 0.17
CLDN6P56747 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 U1.21-201ENST00000580816 167 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 LINC00304-203ENST00000565008 1864 ntBASIC16.13■□□□□ 0.17
CLDN6P56747 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CLDN6P56747 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLDN6P56747 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CLDN6P56747 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms