Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RFC4P35249 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RFC4P35249 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RFC4P35249 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFC4P35249 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
RFC4P35249 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.99■□□□□ 0.95
RFC4P35249 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.99■□□□□ 0.95
RFC4P35249 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RFC4P35249 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.99■□□□□ 0.95
RFC4P35249 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 MIR1909-201ENST00000411312 80 ntBASIC20.99■□□□□ 0.95
RFC4P35249 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.99■□□□□ 0.95
RFC4P35249 DOC2GP-202ENST00000514950 1163 ntBASIC20.99■□□□□ 0.95
RFC4P35249 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.99■□□□□ 0.95
RFC4P35249 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.99■□□□□ 0.95
RFC4P35249 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.99■□□□□ 0.95
RFC4P35249 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.99■□□□□ 0.95
RFC4P35249 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.99■□□□□ 0.95
RFC4P35249 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.99■□□□□ 0.95
RFC4P35249 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFC4P35249 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.99■□□□□ 0.95
RFC4P35249 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.98■□□□□ 0.95
RFC4P35249 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.98■□□□□ 0.95
RFC4P35249 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.98■□□□□ 0.95
RFC4P35249 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.98■□□□□ 0.95
RFC4P35249 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
RFC4P35249 AC079776.1-201ENST00000401540 1152 ntBASIC20.98■□□□□ 0.95
RFC4P35249 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
RFC4P35249 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RFC4P35249 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
RFC4P35249 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.98■□□□□ 0.95
RFC4P35249 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.98■□□□□ 0.95
RFC4P35249 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.98■□□□□ 0.95
RFC4P35249 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
RFC4P35249 MIR6805-201ENST00000615055 62 ntBASIC20.98■□□□□ 0.95
RFC4P35249 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.98■□□□□ 0.95
RFC4P35249 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFC4P35249 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.98■□□□□ 0.95
RFC4P35249 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.97■□□□□ 0.95
RFC4P35249 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.97■□□□□ 0.95
RFC4P35249 WDR53-204ENST00000433160 887 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 SLC25A6P5-201ENST00000435663 894 ntBASIC20.97■□□□□ 0.95
RFC4P35249 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
RFC4P35249 RN7SL618P-201ENST00000477850 296 ntBASIC20.97■□□□□ 0.95
RFC4P35249 AC093004.1-201ENST00000508850 424 ntBASIC20.97■□□□□ 0.95
RFC4P35249 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.97■□□□□ 0.95
RFC4P35249 KRT17P8-201ENST00000540749 863 ntBASIC20.97■□□□□ 0.95
RFC4P35249 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.97■□□□□ 0.95
RFC4P35249 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.97■□□□□ 0.95
RFC4P35249 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.97■□□□□ 0.95
RFC4P35249 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RFC4P35249 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.97■□□□□ 0.95
RFC4P35249 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.97■□□□□ 0.95
RFC4P35249 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.97■□□□□ 0.95
RFC4P35249 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.96■□□□□ 0.95
RFC4P35249 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RFC4P35249 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC20.96■□□□□ 0.95
RFC4P35249 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RFC4P35249 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RFC4P35249 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms