Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.94
COL5A3P25940 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.89■□□□□ 0.94
COL5A3P25940 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A3P25940 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
COL5A3P25940 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL5A3P25940 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
COL5A3P25940 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A3P25940 SPDYE17-201ENST00000412399 783 ntBASIC20.89■□□□□ 0.93
COL5A3P25940 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.89■□□□□ 0.93
COL5A3P25940 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A3P25940 AL033527.5-202ENST00000641632 1098 ntBASIC20.89■□□□□ 0.93
COL5A3P25940 AL139011.1-202ENST00000642063 584 ntBASIC20.89■□□□□ 0.93
COL5A3P25940 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
COL5A3P25940 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.89■□□□□ 0.93
COL5A3P25940 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL5A3P25940 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.89■□□□□ 0.93
COL5A3P25940 AC092053.1-201ENST00000605787 1936 ntBASIC20.88■□□□□ 0.93
COL5A3P25940 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL5A3P25940 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC20.88■□□□□ 0.93
COL5A3P25940 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL5A3P25940 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.88■□□□□ 0.93
COL5A3P25940 AC123567.1-201ENST00000548294 1261 ntBASIC20.88■□□□□ 0.93
COL5A3P25940 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.88■□□□□ 0.93
COL5A3P25940 RAB43P1-201ENST00000561790 589 ntBASIC20.88■□□□□ 0.93
COL5A3P25940 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.88■□□□□ 0.93
COL5A3P25940 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.88■□□□□ 0.93
COL5A3P25940 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.88■□□□□ 0.93
COL5A3P25940 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
COL5A3P25940 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
COL5A3P25940 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL5A3P25940 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL5A3P25940 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.87■□□□□ 0.93
COL5A3P25940 AC007389.4-201ENST00000454674 793 ntBASIC20.87■□□□□ 0.93
COL5A3P25940 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 RRP7BP-205ENST00000566851 833 ntBASIC20.87■□□□□ 0.93
COL5A3P25940 ORC6-206ENST00000568364 888 ntTSL 5 BASIC20.87■□□□□ 0.93
COL5A3P25940 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC20.87■□□□□ 0.93
COL5A3P25940 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
COL5A3P25940 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 KRT223P-202ENST00000449164 1292 ntBASIC20.87■□□□□ 0.93
COL5A3P25940 RN7SL752P-201ENST00000463779 287 ntBASIC20.87■□□□□ 0.93
COL5A3P25940 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL5A3P25940 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.87■□□□□ 0.93
COL5A3P25940 WFDC1-204ENST00000613603 549 ntBASIC20.87■□□□□ 0.93
COL5A3P25940 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.87■□□□□ 0.93
COL5A3P25940 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.87■□□□□ 0.93
COL5A3P25940 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.86■□□□□ 0.93
COL5A3P25940 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.86■□□□□ 0.93
COL5A3P25940 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
COL5A3P25940 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.86■□□□□ 0.93
COL5A3P25940 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.86■□□□□ 0.93
COL5A3P25940 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.86■□□□□ 0.93
COL5A3P25940 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC20.86■□□□□ 0.93
COL5A3P25940 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.86■□□□□ 0.93
COL5A3P25940 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.86■□□□□ 0.93
COL5A3P25940 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC20.86■□□□□ 0.93
COL5A3P25940 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
COL5A3P25940 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.86■□□□□ 0.93
COL5A3P25940 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms