Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KRT8P13-201ENST00000463294 1010 ntBASIC17.21■□□□□ 0.35
COL9A1P20849 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.21■□□□□ 0.35
COL9A1P20849 AC135586.1-201ENST00000539323 574 ntBASIC17.21■□□□□ 0.35
COL9A1P20849 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.21■□□□□ 0.35
COL9A1P20849 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.21■□□□□ 0.35
COL9A1P20849 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.21■□□□□ 0.35
COL9A1P20849 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL9A1P20849 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.21■□□□□ 0.35
COL9A1P20849 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL9A1P20849 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
COL9A1P20849 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
COL9A1P20849 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL9A1P20849 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL9A1P20849 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.2■□□□□ 0.34
COL9A1P20849 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
COL9A1P20849 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.2■□□□□ 0.34
COL9A1P20849 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.2■□□□□ 0.34
COL9A1P20849 HLA-V-204ENST00000476601 1289 ntBASIC17.2■□□□□ 0.34
COL9A1P20849 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.2■□□□□ 0.34
COL9A1P20849 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.2■□□□□ 0.34
COL9A1P20849 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.2■□□□□ 0.34
COL9A1P20849 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.2■□□□□ 0.34
COL9A1P20849 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.2■□□□□ 0.34
COL9A1P20849 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.2■□□□□ 0.34
COL9A1P20849 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.2■□□□□ 0.34
COL9A1P20849 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.2■□□□□ 0.34
COL9A1P20849 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
COL9A1P20849 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
COL9A1P20849 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL9A1P20849 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 AL355312.1-201ENST00000407115 2176 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 AL354751.1-201ENST00000412768 1863 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
COL9A1P20849 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
COL9A1P20849 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
COL9A1P20849 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 AC114501.2-201ENST00000439631 535 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.19■□□□□ 0.34
COL9A1P20849 AC114501.1-201ENST00000445949 172 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC17.19■□□□□ 0.34
COL9A1P20849 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.19■□□□□ 0.34
COL9A1P20849 RNA5SP412-201ENST00000516234 123 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.19■□□□□ 0.34
COL9A1P20849 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.19■□□□□ 0.34
COL9A1P20849 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 AL645728.2-201ENST00000641974 660 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
COL9A1P20849 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL9A1P20849 AC093525.8-201ENST00000624099 1342 ntBASIC17.19■□□□□ 0.34
COL9A1P20849 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
COL9A1P20849 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL9A1P20849 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.18■□□□□ 0.34
COL9A1P20849 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms