Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.33■□□□□ 0.2
CLDN9O95484 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.33■□□□□ 0.2
CLDN9O95484 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.33■□□□□ 0.2
CLDN9O95484 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.33■□□□□ 0.2
CLDN9O95484 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CLDN9O95484 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CLDN9O95484 AC087163.2-201ENST00000457299 853 ntBASIC16.32■□□□□ 0.2
CLDN9O95484 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 AC006504.4-201ENST00000592118 1568 ntBASIC16.32■□□□□ 0.2
CLDN9O95484 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.32■□□□□ 0.2
CLDN9O95484 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 AC107918.4-202ENST00000641623 219 ntBASIC16.32■□□□□ 0.2
CLDN9O95484 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CLDN9O95484 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLDN9O95484 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CLDN9O95484 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 ELK2BP-201ENST00000415014 1224 ntBASIC16.31■□□□□ 0.2
CLDN9O95484 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 KRT18P56-201ENST00000507275 550 ntBASIC16.31■□□□□ 0.2
CLDN9O95484 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 AL805961.1-202ENST00000641562 540 ntBASIC16.31■□□□□ 0.2
CLDN9O95484 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.31■□□□□ 0.2
CLDN9O95484 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CLDN9O95484 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CLDN9O95484 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CLDN9O95484 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms