Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SHOX2O60902 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.91■□□□□ 0.3
SHOX2O60902 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.9■□□□□ 0.3
SHOX2O60902 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.9■□□□□ 0.3
SHOX2O60902 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.9■□□□□ 0.3
SHOX2O60902 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 PRORSD1P-201ENST00000295112 541 ntBASIC16.9■□□□□ 0.3
SHOX2O60902 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SHOX2O60902 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.9■□□□□ 0.3
SHOX2O60902 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.9■□□□□ 0.3
SHOX2O60902 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 REXO1L10P-201ENST00000615707 1290 ntBASIC16.9■□□□□ 0.3
SHOX2O60902 ITM2C-210ENST00000620962 501 ntBASIC16.9■□□□□ 0.3
SHOX2O60902 REXO1L12P-201ENST00000622156 912 ntBASIC16.9■□□□□ 0.3
SHOX2O60902 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SHOX2O60902 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SHOX2O60902 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.9■□□□□ 0.3
SHOX2O60902 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SHOX2O60902 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SHOX2O60902 CICP23-201ENST00000605013 2741 ntBASIC16.9■□□□□ 0.3
SHOX2O60902 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHOX2O60902 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
SHOX2O60902 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHOX2O60902 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SHOX2O60902 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SHOX2O60902 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHOX2O60902 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SHOX2O60902 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 AL135905.2-201ENST00000584934 1404 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 AL135999.2-201ENST00000622438 1686 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 AL158047.1-201ENST00000445918 881 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
SHOX2O60902 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 AC142381.4-202ENST00000563973 229 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 AC109462.3-201ENST00000573934 613 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.89■□□□□ 0.29
SHOX2O60902 AC113410.3-201ENST00000623366 203 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.89■□□□□ 0.29
SHOX2O60902 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
SHOX2O60902 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
SHOX2O60902 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
SHOX2O60902 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
SHOX2O60902 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SHOX2O60902 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SHOX2O60902 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SHOX2O60902 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms