Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1BO60663 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
LMX1BO60663 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC14.87□□□□□ -0.03
LMX1BO60663 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC14.87□□□□□ -0.03
LMX1BO60663 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.87□□□□□ -0.03
LMX1BO60663 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1BO60663 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 AC006449.5-201ENST00000610658 2098 ntBASIC14.87□□□□□ -0.03
LMX1BO60663 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1BO60663 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 OR6D1P-203ENST00000641209 4860 ntBASIC14.87□□□□□ -0.03
LMX1BO60663 AL645728.1-201ENST00000366221 2101 ntBASIC14.87□□□□□ -0.03
LMX1BO60663 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
LMX1BO60663 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1BO60663 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
LMX1BO60663 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
LMX1BO60663 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.87□□□□□ -0.03
LMX1BO60663 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
LMX1BO60663 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 HNRNPDP1-201ENST00000439535 754 ntBASIC14.86□□□□□ -0.03
LMX1BO60663 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.86□□□□□ -0.03
LMX1BO60663 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 AC027601.4-201ENST00000611259 610 ntBASIC14.86□□□□□ -0.03
LMX1BO60663 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
LMX1BO60663 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.86□□□□□ -0.03
LMX1BO60663 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC14.86□□□□□ -0.03
LMX1BO60663 INTS4P1-201ENST00000438455 1935 ntBASIC14.86□□□□□ -0.03
LMX1BO60663 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LMX1BO60663 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LMX1BO60663 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms