Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 AC016629.1-201ENST00000596579 586 ntBASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TMEM88BA6NKF7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 FXNP2-201ENST00000411625 547 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 TIMM17BP1-201ENST00000545713 516 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 AC091271.1-201ENST00000611877 1162 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 AC015967.2-201ENST00000624092 234 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 AC006435.4-201ENST00000625037 234 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 AL356737.1-201ENST00000634391 234 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 KRT8P22-201ENST00000562317 1415 ntBASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.32■□□□□ 0.68
TMEM88BA6NKF7 LYSMD4-203ENST00000378904 2122 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 AL162726.2-201ENST00000438986 1017 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 BCRP2-202ENST00000447763 634 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 BCRP6-201ENST00000510112 632 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 BCRP7-201ENST00000511549 544 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 TDH-203ENST00000531764 1110 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 AL118558.3-201ENST00000607414 1079 ntBASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TMEM88BA6NKF7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 RPL13AP20-201ENST00000459725 609 ntBASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 AP000812.2-201ENST00000538934 718 ntBASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.3■□□□□ 0.68
TMEM88BA6NKF7 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms