Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.99■□□□□ 0.47
SIX4Q9UIU6 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 AC006538.3-201ENST00000612495 578 ntBASIC17.99■□□□□ 0.47
SIX4Q9UIU6 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 ELL2P1-201ENST00000413990 1906 ntBASIC17.99■□□□□ 0.47
SIX4Q9UIU6 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AL512652.2-201ENST00000625156 1716 ntBASIC17.98■□□□□ 0.47
SIX4Q9UIU6 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AGGF1P2-201ENST00000426656 2106 ntBASIC17.98■□□□□ 0.47
SIX4Q9UIU6 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 MIR1233-2-201ENST00000408138 82 ntBASIC17.98■□□□□ 0.47
SIX4Q9UIU6 MIR1233-1-201ENST00000408722 82 ntBASIC17.98■□□□□ 0.47
SIX4Q9UIU6 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AC112191.1-201ENST00000523689 701 ntBASIC17.98■□□□□ 0.47
SIX4Q9UIU6 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX4Q9UIU6 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 PMS2P4-201ENST00000412466 1052 ntBASIC17.97■□□□□ 0.47
SIX4Q9UIU6 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 FLJ38576-201ENST00000623820 2459 ntBASIC17.97■□□□□ 0.47
SIX4Q9UIU6 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX4Q9UIU6 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX4Q9UIU6 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms