Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 AC064862.7-201ENST00000604520 867 ntBASIC17.46■□□□□ 0.39
PCDH9Q9HC56 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
PCDH9Q9HC56 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCDH9Q9HC56 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 RNPS1P1-201ENST00000507437 918 ntBASIC17.45■□□□□ 0.38
PCDH9Q9HC56 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 AC104692.2-201ENST00000603054 253 ntBASIC17.45■□□□□ 0.38
PCDH9Q9HC56 AC025062.2-201ENST00000605477 670 ntBASIC17.45■□□□□ 0.38
PCDH9Q9HC56 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 NCF1C-201ENST00000438382 1427 ntBASIC17.45■□□□□ 0.38
PCDH9Q9HC56 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDH9Q9HC56 AL662844.4-201ENST00000606367 2838 ntBASIC17.44■□□□□ 0.38
PCDH9Q9HC56 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 AL160237.2-201ENST00000556165 472 ntBASIC17.44■□□□□ 0.38
PCDH9Q9HC56 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 AL589182.2-201ENST00000619332 1049 ntBASIC17.44■□□□□ 0.38
PCDH9Q9HC56 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PCDH9Q9HC56 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PCDH9Q9HC56 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms