Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 BAATP1-201ENST00000412284 1225 ntBASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 SPDYE17-201ENST00000412399 783 ntBASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 COX5BP1-201ENST00000507622 393 ntBASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 MIR4492-201ENST00000581627 80 ntBASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
COL25A1Q9BXS0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 AC018735.1-201ENST00000437208 1502 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 SPTLC1P5-201ENST00000450718 252 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 AC106760.1-201ENST00000508690 800 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 ENPP7P5-201ENST00000541031 1031 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 NPM1P43-201ENST00000558669 786 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 AC074044.1-201ENST00000609673 707 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 LINC00565-201ENST00000562710 2331 ntBASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.77■□□□□ 0.28
COL25A1Q9BXS0 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL25A1Q9BXS0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 RPSAP36-202ENST00000494591 1261 ntBASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 AC091167.2-201ENST00000579581 588 ntBASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 COX6A1P2-201ENST00000620597 330 ntBASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.76■□□□□ 0.27
COL25A1Q9BXS0 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms