Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC42Q96M95 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC42Q96M95 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC42Q96M95 LINC00895-201ENST00000629028 1637 ntBASIC18.27■□□□□ 0.51
CCDC42Q96M95 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC42Q96M95 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC42Q96M95 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 AC097637.2-201ENST00000624096 1997 ntBASIC18.26■□□□□ 0.51
CCDC42Q96M95 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 HLA-J-202ENST00000469281 1241 ntBASIC18.26■□□□□ 0.51
CCDC42Q96M95 AC096582.2-201ENST00000510860 516 ntBASIC18.26■□□□□ 0.51
CCDC42Q96M95 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 AL121956.5-201ENST00000625261 221 ntBASIC18.26■□□□□ 0.51
CCDC42Q96M95 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC42Q96M95 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC42Q96M95 AC006538.1-201ENST00000567905 1585 ntBASIC18.25■□□□□ 0.51
CCDC42Q96M95 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ME2P1-201ENST00000426028 1970 ntBASIC18.25■□□□□ 0.51
CCDC42Q96M95 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 RCN1P2-201ENST00000398357 915 ntBASIC18.25■□□□□ 0.51
CCDC42Q96M95 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 AP000867.4-201ENST00000641616 219 ntBASIC18.25■□□□□ 0.51
CCDC42Q96M95 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC42Q96M95 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.25■□□□□ 0.51
CCDC42Q96M95 AC022188.1-201ENST00000620960 1664 ntBASIC18.25■□□□□ 0.51
CCDC42Q96M95 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC42Q96M95 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 AC005332.1-201ENST00000577698 1310 ntBASIC18.24■□□□□ 0.51
CCDC42Q96M95 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC42Q96M95 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CCDC42Q96M95 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms