Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 AC099336.1-201ENST00000417053 1171 ntBASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 BANF1P1-201ENST00000553684 263 ntBASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 AL512361.1-201ENST00000554200 418 ntBASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 PDIA3P1-201ENST00000471856 1510 ntBASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMC1BQ8NDV3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 FAM220BP-201ENST00000377689 816 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC098850.1-201ENST00000419919 790 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 KRT18P34-201ENST00000488218 1270 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC023310.3-201ENST00000557027 670 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC100756.1-201ENST00000562736 682 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC138749.3-201ENST00000567691 622 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC116165.1-201ENST00000611806 668 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 FOXO1B-201ENST00000504678 1527 ntBASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMC1BQ8NDV3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 AC018665.1-201ENST00000622927 1362 ntBASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 AP001350.2-201ENST00000625104 1094 ntBASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMC1BQ8NDV3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 AL096828.2-201ENST00000567259 1965 ntBASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 USP32P1-208ENST00000506594 1164 ntBASIC19.83■□□□□ 0.77
SMC1BQ8NDV3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms