Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC13.87□□□□□ -0.19
CDX1P47902 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CDX1P47902 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC13.87□□□□□ -0.19
CDX1P47902 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.87□□□□□ -0.19
CDX1P47902 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.87□□□□□ -0.19
CDX1P47902 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 IGHV3OR16-7-201ENST00000604106 360 ntBASIC13.87□□□□□ -0.19
CDX1P47902 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CDX1P47902 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.87□□□□□ -0.19
CDX1P47902 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.87□□□□□ -0.19
CDX1P47902 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC13.87□□□□□ -0.19
CDX1P47902 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.87□□□□□ -0.19
CDX1P47902 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 PAUPAR-201ENST00000630360 2965 ntBASIC13.86□□□□□ -0.19
CDX1P47902 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.86□□□□□ -0.19
CDX1P47902 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
CDX1P47902 AC026396.1-201ENST00000419388 421 ntBASIC13.86□□□□□ -0.19
CDX1P47902 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.86□□□□□ -0.19
CDX1P47902 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.86□□□□□ -0.19
CDX1P47902 THAP5-204ENST00000438865 868 ntTSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.86□□□□□ -0.19
CDX1P47902 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.86□□□□□ -0.19
CDX1P47902 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.86□□□□□ -0.19
CDX1P47902 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.86□□□□□ -0.19
CDX1P47902 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.86□□□□□ -0.19
CDX1P47902 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC13.86□□□□□ -0.19
CDX1P47902 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.86□□□□□ -0.19
CDX1P47902 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.86□□□□□ -0.19
CDX1P47902 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.86□□□□□ -0.19
CDX1P47902 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CDX1P47902 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CDX1P47902 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
CDX1P47902 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CDX1P47902 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CDX1P47902 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms