Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.18■□□□□ 0.18
MSX2P35548 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.18■□□□□ 0.18
MSX2P35548 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 AC126177.1-201ENST00000547829 2218 ntBASIC16.18■□□□□ 0.18
MSX2P35548 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.17■□□□□ 0.18
MSX2P35548 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 ZNF444P1-201ENST00000559497 298 ntBASIC16.17■□□□□ 0.18
MSX2P35548 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.17■□□□□ 0.18
MSX2P35548 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 GPR32P1-201ENST00000601788 811 ntBASIC16.17■□□□□ 0.18
MSX2P35548 LINC02228-204ENST00000642115 2962 ntBASIC16.17■□□□□ 0.18
MSX2P35548 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.17■□□□□ 0.18
MSX2P35548 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
MSX2P35548 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSX2P35548 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.16■□□□□ 0.18
MSX2P35548 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.16■□□□□ 0.18
MSX2P35548 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.16■□□□□ 0.18
MSX2P35548 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.16■□□□□ 0.18
MSX2P35548 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
MSX2P35548 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.16■□□□□ 0.18
MSX2P35548 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
MSX2P35548 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.16■□□□□ 0.18
MSX2P35548 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.16■□□□□ 0.18
MSX2P35548 AC140113.3-201ENST00000605663 199 ntBASIC16.16■□□□□ 0.18
MSX2P35548 AL138966.2-201ENST00000621997 464 ntBASIC16.16■□□□□ 0.18
MSX2P35548 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MSX2P35548 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms