Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 BTNL10-201ENST00000595971 695 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 AL022328.1-201ENST00000610050 478 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 CDC14C-201ENST00000428251 1719 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.61■□□□□ 0.73
SCN4AP35499 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SCN4AP35499 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
SCN4AP35499 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SCN4AP35499 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
SCN4AP35499 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.61■□□□□ 0.73
SCN4AP35499 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.61■□□□□ 0.73
SCN4AP35499 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.61■□□□□ 0.73
SCN4AP35499 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.61■□□□□ 0.73
SCN4AP35499 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.61■□□□□ 0.73
SCN4AP35499 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC19.61■□□□□ 0.73
SCN4AP35499 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.61■□□□□ 0.73
SCN4AP35499 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.61■□□□□ 0.73
SCN4AP35499 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC19.61■□□□□ 0.73
SCN4AP35499 AC026979.3-201ENST00000607315 403 ntBASIC19.61■□□□□ 0.73
SCN4AP35499 AC074044.1-201ENST00000609673 707 ntBASIC19.61■□□□□ 0.73
SCN4AP35499 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.61■□□□□ 0.73
SCN4AP35499 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SCN4AP35499 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.61■□□□□ 0.73
SCN4AP35499 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SCN4AP35499 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SCN4AP35499 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.6■□□□□ 0.73
SCN4AP35499 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.6■□□□□ 0.73
SCN4AP35499 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.6■□□□□ 0.73
SCN4AP35499 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC19.6■□□□□ 0.73
SCN4AP35499 RETN-203ENST00000629642 400 ntTSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 AC108860.2-201ENST00000562760 2183 ntBASIC19.6■□□□□ 0.73
SCN4AP35499 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SCN4AP35499 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.6■□□□□ 0.73
SCN4AP35499 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.6■□□□□ 0.73
SCN4AP35499 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 RN7SL190P-201ENST00000582519 257 ntBASIC19.6■□□□□ 0.73
SCN4AP35499 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.6■□□□□ 0.73
SCN4AP35499 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SCN4AP35499 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SCN4AP35499 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN4AP35499 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN4AP35499 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SCN4AP35499 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SCN4AP35499 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
SCN4AP35499 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 AC005229.1-201ENST00000392885 409 ntBASIC19.59■□□□□ 0.73
SCN4AP35499 GPAA1P2-201ENST00000417923 928 ntBASIC19.59■□□□□ 0.73
SCN4AP35499 AC104596.2-201ENST00000512793 793 ntBASIC19.59■□□□□ 0.73
SCN4AP35499 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC19.59■□□□□ 0.73
SCN4AP35499 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SCN4AP35499 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SCN4AP35499 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.59■□□□□ 0.73
SCN4AP35499 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC19.59■□□□□ 0.73
SCN4AP35499 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.59■□□□□ 0.73
SCN4AP35499 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms