Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.77■□□□□ 0.44
BDNFP23560 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
BDNFP23560 AP001350.2-201ENST00000625104 1094 ntBASIC17.77■□□□□ 0.44
BDNFP23560 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
BDNFP23560 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.77■□□□□ 0.44
BDNFP23560 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
BDNFP23560 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BDNFP23560 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
BDNFP23560 AP001094.4-201ENST00000579008 2176 ntBASIC17.77■□□□□ 0.43
BDNFP23560 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.77■□□□□ 0.43
BDNFP23560 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
BDNFP23560 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BDNFP23560 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BDNFP23560 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
BDNFP23560 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.77■□□□□ 0.43
BDNFP23560 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BDNFP23560 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
BDNFP23560 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.76■□□□□ 0.43
BDNFP23560 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 CNN2P11-201ENST00000429351 262 ntBASIC17.76■□□□□ 0.43
BDNFP23560 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.76■□□□□ 0.43
BDNFP23560 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
BDNFP23560 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.76■□□□□ 0.43
BDNFP23560 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.76■□□□□ 0.43
BDNFP23560 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 CYP2A7P1-201ENST00000595391 815 ntBASIC17.76■□□□□ 0.43
BDNFP23560 AL009183.1-201ENST00000603760 355 ntBASIC17.76■□□□□ 0.43
BDNFP23560 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.76■□□□□ 0.43
BDNFP23560 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BDNFP23560 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
BDNFP23560 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.76■□□□□ 0.43
BDNFP23560 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.75■□□□□ 0.43
BDNFP23560 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
BDNFP23560 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.75■□□□□ 0.43
BDNFP23560 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.75■□□□□ 0.43
BDNFP23560 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.75■□□□□ 0.43
BDNFP23560 RNU1-129P-201ENST00000384064 167 ntBASIC17.75■□□□□ 0.43
BDNFP23560 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.75■□□□□ 0.43
BDNFP23560 AL671277.1-201ENST00000429656 993 ntBASIC17.75■□□□□ 0.43
BDNFP23560 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.75■□□□□ 0.43
BDNFP23560 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.75■□□□□ 0.43
BDNFP23560 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
BDNFP23560 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.75■□□□□ 0.43
BDNFP23560 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.75■□□□□ 0.43
BDNFP23560 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.75■□□□□ 0.43
BDNFP23560 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
BDNFP23560 U1.21-201ENST00000580816 167 ntBASIC17.75■□□□□ 0.43
BDNFP23560 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.75■□□□□ 0.43
BDNFP23560 AL031055.1-201ENST00000606362 631 ntBASIC17.75■□□□□ 0.43
BDNFP23560 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
BDNFP23560 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
BDNFP23560 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.75■□□□□ 0.43
BDNFP23560 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BDNFP23560 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
BDNFP23560 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.74■□□□□ 0.43
BDNFP23560 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BDNFP23560 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.74■□□□□ 0.43
BDNFP23560 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BDNFP23560 AL355306.1-201ENST00000415580 579 ntBASIC17.74■□□□□ 0.43
BDNFP23560 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms