Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MIR770-201ENST00000390219 98 ntBASIC14.34□□□□□ -0.11
USF1P22415 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.34□□□□□ -0.11
USF1P22415 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 FAM185BP-201ENST00000443595 716 ntBASIC14.34□□□□□ -0.11
USF1P22415 AL513480.1-201ENST00000451731 511 ntBASIC14.34□□□□□ -0.11
USF1P22415 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.34□□□□□ -0.11
USF1P22415 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 AC092364.2-202ENST00000597012 1073 ntBASIC14.34□□□□□ -0.11
USF1P22415 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 REXO1L3P-201ENST00000622202 1288 ntBASIC14.34□□□□□ -0.11
USF1P22415 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
USF1P22415 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.34□□□□□ -0.11
USF1P22415 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
USF1P22415 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.33□□□□□ -0.11
USF1P22415 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.33□□□□□ -0.11
USF1P22415 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
USF1P22415 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.33□□□□□ -0.11
USF1P22415 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
USF1P22415 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USF1P22415 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
USF1P22415 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
USF1P22415 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.33□□□□□ -0.12
USF1P22415 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 AC112191.1-201ENST00000523689 701 ntBASIC14.33□□□□□ -0.12
USF1P22415 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.33□□□□□ -0.12
USF1P22415 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.33□□□□□ -0.12
USF1P22415 AC093028.1-201ENST00000622998 982 ntBASIC14.33□□□□□ -0.12
USF1P22415 AC092902.6-201ENST00000641783 218 ntBASIC14.33□□□□□ -0.12
USF1P22415 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
USF1P22415 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.33□□□□□ -0.12
USF1P22415 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 AL138688.1-201ENST00000624851 1594 ntBASIC14.33□□□□□ -0.12
USF1P22415 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
USF1P22415 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
USF1P22415 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC14.33□□□□□ -0.12
USF1P22415 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.32□□□□□ -0.12
USF1P22415 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
USF1P22415 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 AC046185.3-201ENST00000623228 1824 ntBASIC14.32□□□□□ -0.12
USF1P22415 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
USF1P22415 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.32□□□□□ -0.12
USF1P22415 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
USF1P22415 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.32□□□□□ -0.12
USF1P22415 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.32□□□□□ -0.12
USF1P22415 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.32□□□□□ -0.12
USF1P22415 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.32□□□□□ -0.12
USF1P22415 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.32□□□□□ -0.12
USF1P22415 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 LINC01451-201ENST00000623792 534 ntBASIC14.32□□□□□ -0.12
USF1P22415 AL513210.1-201ENST00000629608 234 ntBASIC14.32□□□□□ -0.12
USF1P22415 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
USF1P22415 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms