Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HLA-DQA1P01909 MYO15B-237ENST00000642007 4893 ntBASIC12.77□□□□□ -0.37
HLA-DQA1P01909 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 AL603832.2-201ENST00000566195 2125 ntBASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MIR718-201ENST00000390190 70 ntBASIC12.76□□□□□ -0.37
HLA-DQA1P01909 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 AC104390.1-201ENST00000555663 520 ntBASIC12.76□□□□□ -0.37
HLA-DQA1P01909 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 AC026271.3-201ENST00000571884 352 ntBASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 DECR2-212ENST00000627716 352 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 AP006294.2-201ENST00000641667 209 ntBASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
HLA-DQA1P01909 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 STX3-203ENST00000529177 1571 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 CD177P1-201ENST00000606252 935 ntBASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 AP002414.2-201ENST00000591780 3365 ntBASIC12.75□□□□□ -0.37
HLA-DQA1P01909 AC138969.2-201ENST00000532739 9932 ntBASIC12.75□□□□□ -0.37
HLA-DQA1P01909 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
HLA-DQA1P01909 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms