Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
RAPGEF3O95398 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
RAPGEF3O95398 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
RAPGEF3O95398 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 MADD-208ENST00000405573 1823 ntTSL 5 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 AC005229.1-201ENST00000392885 409 ntBASIC24.92■■□□□ 1.58
RAPGEF3O95398 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 KLF2P4-201ENST00000451959 1225 ntBASIC24.92■■□□□ 1.58
RAPGEF3O95398 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
RAPGEF3O95398 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC24.92■■□□□ 1.58
RAPGEF3O95398 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 AC120498.9-201ENST00000339021 3867 ntBASIC24.91■■□□□ 1.58
RAPGEF3O95398 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 AIRN-201ENST00000601203 4374 ntBASIC24.91■■□□□ 1.58
RAPGEF3O95398 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 NSL1-201ENST00000366976 722 ntTSL 2 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 CSF2RBP1-201ENST00000447905 391 ntBASIC24.91■■□□□ 1.58
RAPGEF3O95398 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 AC092337.1-201ENST00000568699 1129 ntBASIC24.91■■□□□ 1.58
RAPGEF3O95398 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC24.91■■□□□ 1.58
RAPGEF3O95398 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
RAPGEF3O95398 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 RNA5SP412-201ENST00000516234 123 ntBASIC24.9■■□□□ 1.58
RAPGEF3O95398 SLC25A47P1-201ENST00000531577 414 ntBASIC24.9■■□□□ 1.58
RAPGEF3O95398 RHOQP1-201ENST00000555758 579 ntBASIC24.9■■□□□ 1.58
RAPGEF3O95398 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 RRP7BP-205ENST00000566851 833 ntBASIC24.9■■□□□ 1.58
RAPGEF3O95398 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC24.9■■□□□ 1.58
RAPGEF3O95398 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC24.9■■□□□ 1.58
RAPGEF3O95398 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
RAPGEF3O95398 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 CLK3P2-201ENST00000427566 1453 ntBASIC24.89■■□□□ 1.58
RAPGEF3O95398 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC24.89■■□□□ 1.58
RAPGEF3O95398 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC24.89■■□□□ 1.58
RAPGEF3O95398 FRMD8P1-201ENST00000440433 1524 ntBASIC24.89■■□□□ 1.57
RAPGEF3O95398 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.57
RAPGEF3O95398 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms