Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
COL6A5A8TX70 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
COL6A5A8TX70 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 FNTAP2-201ENST00000430308 634 ntBASIC12.9□□□□□ -0.35
COL6A5A8TX70 BX284668.4-201ENST00000453917 508 ntBASIC12.9□□□□□ -0.35
COL6A5A8TX70 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.9□□□□□ -0.35
COL6A5A8TX70 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC12.9□□□□□ -0.35
COL6A5A8TX70 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 EGFEM1P-202ENST00000431685 1563 ntBASIC12.89□□□□□ -0.35
COL6A5A8TX70 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 MAGEA5-201ENST00000446757 942 ntBASIC12.89□□□□□ -0.35
COL6A5A8TX70 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 KRT8P37-201ENST00000451609 1420 ntBASIC12.89□□□□□ -0.35
COL6A5A8TX70 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 HNRNPA1P32-201ENST00000396326 963 ntBASIC12.89□□□□□ -0.35
COL6A5A8TX70 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 TIMM17BP1-201ENST00000545713 516 ntBASIC12.89□□□□□ -0.35
COL6A5A8TX70 RARRES2P5-201ENST00000564013 466 ntBASIC12.89□□□□□ -0.35
COL6A5A8TX70 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC12.89□□□□□ -0.35
COL6A5A8TX70 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL6A5A8TX70 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 AL162726.2-201ENST00000438986 1017 ntBASIC12.88□□□□□ -0.35
COL6A5A8TX70 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL6A5A8TX70 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC12.88□□□□□ -0.35
COL6A5A8TX70 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms