Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 ME2P1-201ENST00000426028 1970 ntBASIC16.84■□□□□ 0.29
TREX1Q9NSU2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TREX1Q9NSU2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
TREX1Q9NSU2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
TREX1Q9NSU2 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
TREX1Q9NSU2 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
TREX1Q9NSU2 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 KRT8P39-201ENST00000396270 1433 ntBASIC16.83■□□□□ 0.28
TREX1Q9NSU2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 AP002469.2-201ENST00000531724 424 ntBASIC16.83■□□□□ 0.28
TREX1Q9NSU2 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 OR7E47P-204ENST00000575924 449 ntBASIC16.83■□□□□ 0.28
TREX1Q9NSU2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.83■□□□□ 0.28
TREX1Q9NSU2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.83■□□□□ 0.28
TREX1Q9NSU2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 GGT3P-204ENST00000453783 1664 ntBASIC16.82■□□□□ 0.28
TREX1Q9NSU2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.82■□□□□ 0.28
TREX1Q9NSU2 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 RPS2P28-201ENST00000314255 741 ntBASIC16.82■□□□□ 0.28
TREX1Q9NSU2 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TREX1Q9NSU2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 AL662844.4-201ENST00000606367 2838 ntBASIC16.81■□□□□ 0.28
TREX1Q9NSU2 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TREX1Q9NSU2 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms