Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 TPM4P1-201ENST00000436100 807 ntBASIC17.48■□□□□ 0.39
PCDH9Q9HC56 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 AC021087.4-201ENST00000563761 564 ntBASIC17.48■□□□□ 0.39
PCDH9Q9HC56 AL031008.1-201ENST00000619963 541 ntBASIC17.48■□□□□ 0.39
PCDH9Q9HC56 TP73-AS1-207ENST00000624167 988 ntBASIC17.48■□□□□ 0.39
PCDH9Q9HC56 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 AL021920.2-201ENST00000624828 1351 ntBASIC17.48■□□□□ 0.39
PCDH9Q9HC56 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDH9Q9HC56 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 LINC00982-205ENST00000420957 435 ntBASIC17.47■□□□□ 0.39
PCDH9Q9HC56 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
PCDH9Q9HC56 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 AL391005.1-201ENST00000623953 2435 ntBASIC17.46■□□□□ 0.39
PCDH9Q9HC56 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 FAM197Y8-203ENST00000450145 560 ntBASIC17.46■□□□□ 0.39
PCDH9Q9HC56 HLA-J-202ENST00000469281 1241 ntBASIC17.46■□□□□ 0.39
PCDH9Q9HC56 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDH9Q9HC56 AC073648.2-201ENST00000510116 352 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms