Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.34■□□□□ 0.69
USP28Q96RU2 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.34■□□□□ 0.69
USP28Q96RU2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.34■□□□□ 0.69
USP28Q96RU2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.34■□□□□ 0.69
USP28Q96RU2 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USP28Q96RU2 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
USP28Q96RU2 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP28Q96RU2 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.33■□□□□ 0.69
USP28Q96RU2 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USP28Q96RU2 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP28Q96RU2 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
USP28Q96RU2 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.33■□□□□ 0.69
USP28Q96RU2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
USP28Q96RU2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.33■□□□□ 0.69
USP28Q96RU2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP28Q96RU2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USP28Q96RU2 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USP28Q96RU2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.33■□□□□ 0.68
USP28Q96RU2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.33■□□□□ 0.68
USP28Q96RU2 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.33■□□□□ 0.68
USP28Q96RU2 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.33■□□□□ 0.68
USP28Q96RU2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.33■□□□□ 0.68
USP28Q96RU2 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.33■□□□□ 0.68
USP28Q96RU2 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.33■□□□□ 0.68
USP28Q96RU2 MTDHP4-201ENST00000600287 670 ntBASIC19.33■□□□□ 0.68
USP28Q96RU2 AC008608.2-201ENST00000606089 416 ntBASIC19.33■□□□□ 0.68
USP28Q96RU2 AL121772.3-201ENST00000610840 674 ntBASIC19.33■□□□□ 0.68
USP28Q96RU2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.33■□□□□ 0.68
USP28Q96RU2 AC004706.3-202ENST00000621574 984 ntBASIC19.33■□□□□ 0.68
USP28Q96RU2 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.33■□□□□ 0.68
USP28Q96RU2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.33■□□□□ 0.68
USP28Q96RU2 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
USP28Q96RU2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 CICP6-201ENST00000457191 2729 ntBASIC19.32■□□□□ 0.68
USP28Q96RU2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.32■□□□□ 0.68
USP28Q96RU2 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
USP28Q96RU2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.32■□□□□ 0.68
USP28Q96RU2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.32■□□□□ 0.68
USP28Q96RU2 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.32■□□□□ 0.68
USP28Q96RU2 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USP28Q96RU2 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USP28Q96RU2 TOP3BP1-201ENST00000420768 1380 ntBASIC19.32■□□□□ 0.68
USP28Q96RU2 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms