Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.2■□□□□ 0.02
CPNE4Q96A23 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 AC096734.2-201ENST00000562054 433 ntBASIC15.2■□□□□ 0.02
CPNE4Q96A23 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 TOP3BP1-201ENST00000420768 1380 ntBASIC15.2■□□□□ 0.02
CPNE4Q96A23 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.2■□□□□ 0.02
CPNE4Q96A23 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CPNE4Q96A23 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 PMS2P7-201ENST00000506558 1336 ntBASIC15.19■□□□□ 0.02
CPNE4Q96A23 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 MIR940-201ENST00000401276 94 ntBASIC15.19■□□□□ 0.02
CPNE4Q96A23 POLD2P1-201ENST00000511220 997 ntBASIC15.19■□□□□ 0.02
CPNE4Q96A23 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 AC040169.1-201ENST00000565382 521 ntBASIC15.19■□□□□ 0.02
CPNE4Q96A23 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 AC007064.4-201ENST00000637740 555 ntBASIC15.19■□□□□ 0.02
CPNE4Q96A23 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 AC108860.2-201ENST00000562760 2183 ntBASIC15.19■□□□□ 0.02
CPNE4Q96A23 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.19■□□□□ 0.02
CPNE4Q96A23 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CPNE4Q96A23 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CPNE4Q96A23 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 IGLL3P-201ENST00000412472 434 ntBASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 FAM185BP-201ENST00000443595 716 ntBASIC15.18■□□□□ 0.02
CPNE4Q96A23 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC107918.2-201ENST00000530817 355 ntBASIC15.18■□□□□ 0.02
CPNE4Q96A23 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC005412.3-201ENST00000580309 715 ntBASIC15.18■□□□□ 0.02
CPNE4Q96A23 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.18■□□□□ 0.02
CPNE4Q96A23 AL671883.3-201ENST00000603274 991 ntBASIC15.18■□□□□ 0.02
CPNE4Q96A23 REXO1L3P-201ENST00000622202 1288 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms