Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 RCN1P2-201ENST00000398357 915 ntBASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PCED1CP-201ENST00000419887 785 ntBASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 AC104819.1-201ENST00000504587 486 ntBASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 AP002414.4-201ENST00000589764 1148 ntBASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 AC092068.3-201ENST00000587894 2016 ntBASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 IER3-202ENST00000376377 1350 ntBASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC54Q8NEL0 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 HLA-J-202ENST00000469281 1241 ntBASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AC012615.1-201ENST00000565797 1299 ntBASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AC078925.2-201ENST00000624013 1973 ntBASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 AL603756.1-201ENST00000606511 2163 ntBASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC54Q8NEL0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC54Q8NEL0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms