Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 AL158211.3-201ENST00000607385 239 ntBASIC20.9■□□□□ 0.94
SYNE4Q8N205 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
SYNE4Q8N205 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNE4Q8N205 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
SYNE4Q8N205 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.89■□□□□ 0.94
SYNE4Q8N205 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNE4Q8N205 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SYNE4Q8N205 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNE4Q8N205 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNE4Q8N205 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNE4Q8N205 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.89■□□□□ 0.94
SYNE4Q8N205 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 AL021920.2-201ENST00000624828 1351 ntBASIC20.89■□□□□ 0.93
SYNE4Q8N205 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 AP001350.2-201ENST00000625104 1094 ntBASIC20.89■□□□□ 0.93
SYNE4Q8N205 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SYNE4Q8N205 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.89■□□□□ 0.93
SYNE4Q8N205 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SYNE4Q8N205 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
SYNE4Q8N205 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.87■□□□□ 0.93
SYNE4Q8N205 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SYNE4Q8N205 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.87■□□□□ 0.93
SYNE4Q8N205 CRB3P1-201ENST00000449338 276 ntBASIC20.87■□□□□ 0.93
SYNE4Q8N205 AC069120.2-201ENST00000524091 540 ntBASIC20.87■□□□□ 0.93
SYNE4Q8N205 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.87■□□□□ 0.93
SYNE4Q8N205 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.87■□□□□ 0.93
SYNE4Q8N205 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.87■□□□□ 0.93
SYNE4Q8N205 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SYNE4Q8N205 AP3S2-216ENST00000617003 1561 ntBASIC20.87■□□□□ 0.93
SYNE4Q8N205 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms