Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
NUP54Q7Z3B4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 AC129492.6-201ENST00000611383 1305 ntBASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NUP54Q7Z3B4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 AL021920.2-201ENST00000624828 1351 ntBASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 AL591424.1-201ENST00000442569 1213 ntBASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 AC080080.1-201ENST00000625121 2420 ntBASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
NUP54Q7Z3B4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 AC011270.2-201ENST00000624293 2550 ntBASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.64■□□□□ 0.09
NUP54Q7Z3B4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms