Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
ZNF549Q6P9A3 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AC073621.1-201ENST00000392730 636 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 LAGE3P1-201ENST00000425356 484 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 KRT18P27-201ENST00000427733 1299 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 HNRNPDP1-201ENST00000439535 754 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AC087163.2-201ENST00000457299 853 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AP002490.2-201ENST00000524791 560 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AL691432.3-201ENST00000621860 400 ntBASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ZNF549Q6P9A3 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 RNPS1P1-201ENST00000507437 918 ntBASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 AL805961.1-202ENST00000641562 540 ntBASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ZNF549Q6P9A3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 AC002310.6-201ENST00000624451 1377 ntBASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.77■□□□□ 0.28
ZNF549Q6P9A3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms