Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.2■□□□□ 0.34
USP39Q53GS9 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
USP39Q53GS9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.19■□□□□ 0.34
USP39Q53GS9 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
USP39Q53GS9 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
USP39Q53GS9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
USP39Q53GS9 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.19■□□□□ 0.34
USP39Q53GS9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.19■□□□□ 0.34
USP39Q53GS9 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
USP39Q53GS9 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.19■□□□□ 0.34
USP39Q53GS9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.19■□□□□ 0.34
USP39Q53GS9 AC069262.1-201ENST00000539058 672 ntBASIC17.19■□□□□ 0.34
USP39Q53GS9 AC190387.1-201ENST00000551683 408 ntBASIC17.19■□□□□ 0.34
USP39Q53GS9 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.19■□□□□ 0.34
USP39Q53GS9 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 AJ011932.1-201ENST00000621707 465 ntBASIC17.19■□□□□ 0.34
USP39Q53GS9 AL645728.2-201ENST00000641974 660 ntBASIC17.19■□□□□ 0.34
USP39Q53GS9 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
USP39Q53GS9 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
USP39Q53GS9 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
USP39Q53GS9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
USP39Q53GS9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.19■□□□□ 0.34
USP39Q53GS9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
USP39Q53GS9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.19■□□□□ 0.34
USP39Q53GS9 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
USP39Q53GS9 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
USP39Q53GS9 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 PMS2P4-201ENST00000412466 1052 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 AL355306.1-201ENST00000415580 579 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 ADH5P3-201ENST00000433842 1137 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 CNN2P2-201ENST00000443536 909 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 CNN2P3-201ENST00000450201 906 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC093214.1-201ENST00000511688 1107 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC093520.2-201ENST00000561830 333 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 AL136317.3-201ENST00000618497 906 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 Z92544.3-201ENST00000624747 417 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 AC046185.3-201ENST00000623228 1824 ntBASIC17.18■□□□□ 0.34
USP39Q53GS9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.18■□□□□ 0.34
USP39Q53GS9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.18■□□□□ 0.34
USP39Q53GS9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
USP39Q53GS9 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms