Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA3P55318 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 AC024243.1-201ENST00000609234 778 ntBASIC12.76□□□□□ -0.37
FOXA3P55318 TBCB-214ENST00000629269 413 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA3P55318 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 AC097374.2-201ENST00000618617 1306 ntBASIC12.76□□□□□ -0.37
FOXA3P55318 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
FOXA3P55318 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA3P55318 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 VILL-207ENST00000465644 1857 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA3P55318 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 ME2P1-201ENST00000426028 1970 ntBASIC12.76□□□□□ -0.37
FOXA3P55318 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 AC126177.1-201ENST00000547829 2218 ntBASIC12.76□□□□□ -0.37
FOXA3P55318 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA3P55318 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
FOXA3P55318 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC12.75□□□□□ -0.37
FOXA3P55318 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 PRR31-201ENST00000371629 978 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 GXYLT1P6-201ENST00000456472 1187 ntBASIC12.75□□□□□ -0.37
FOXA3P55318 CNP-204ENST00000472031 1019 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 GRAP-204ENST00000573099 846 ntTSL 3 BASIC12.75□□□□□ -0.37
FOXA3P55318 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC12.75□□□□□ -0.37
FOXA3P55318 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 TMED1-207ENST00000591695 809 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 AC024563.2-201ENST00000603282 481 ntBASIC12.75□□□□□ -0.37
FOXA3P55318 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 AC010653.2-201ENST00000623505 997 ntBASIC12.75□□□□□ -0.37
FOXA3P55318 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
FOXA3P55318 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
FOXA3P55318 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA3P55318 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA3P55318 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA3P55318 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms