Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CDH6P55285 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH6P55285 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH6P55285 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CDH6P55285 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
CDH6P55285 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH6P55285 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
CDH6P55285 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH6P55285 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH6P55285 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH6P55285 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH6P55285 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDH6P55285 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH6P55285 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.61■□□□□ 0.41
CDH6P55285 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH6P55285 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CDH6P55285 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDH6P55285 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDH6P55285 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 RNPS1P1-201ENST00000507437 918 ntBASIC17.61■□□□□ 0.41
CDH6P55285 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.61■□□□□ 0.41
CDH6P55285 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.61■□□□□ 0.41
CDH6P55285 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
CDH6P55285 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CDH6P55285 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDH6P55285 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH6P55285 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
CDH6P55285 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH6P55285 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CDH6P55285 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH6P55285 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH6P55285 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH6P55285 FAM197Y8-203ENST00000450145 560 ntBASIC17.6■□□□□ 0.41
CDH6P55285 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH6P55285 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH6P55285 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CDH6P55285 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.6■□□□□ 0.41
CDH6P55285 AL805961.1-202ENST00000641562 540 ntBASIC17.6■□□□□ 0.41
CDH6P55285 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH6P55285 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH6P55285 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CDH6P55285 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH6P55285 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH6P55285 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CDH6P55285 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH6P55285 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH6P55285 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH6P55285 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CDH6P55285 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.59■□□□□ 0.41
CDH6P55285 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH6P55285 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH6P55285 AC087163.2-201ENST00000457299 853 ntBASIC17.59■□□□□ 0.41
CDH6P55285 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.59■□□□□ 0.41
CDH6P55285 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH6P55285 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CDH6P55285 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms