Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.89□□□□□ -0.19
CDX1P47902 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 DFFB-203ENST00000341385 572 ntTSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CDX1P47902 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.89□□□□□ -0.19
CDX1P47902 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 NUS1P2-201ENST00000417358 873 ntBASIC13.89□□□□□ -0.19
CDX1P47902 AC005336.2-201ENST00000593183 939 ntBASIC13.89□□□□□ -0.19
CDX1P47902 AL138831.2-201ENST00000606564 490 ntBASIC13.89□□□□□ -0.19
CDX1P47902 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC13.89□□□□□ -0.19
CDX1P47902 AC114341.1-201ENST00000618070 349 ntBASIC13.89□□□□□ -0.19
CDX1P47902 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CDX1P47902 AL513523.2-202ENST00000427283 2040 ntBASIC13.89□□□□□ -0.19
CDX1P47902 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CDX1P47902 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CDX1P47902 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.88□□□□□ -0.19
CDX1P47902 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.88□□□□□ -0.19
CDX1P47902 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.88□□□□□ -0.19
CDX1P47902 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 AC096582.2-201ENST00000510860 516 ntBASIC13.88□□□□□ -0.19
CDX1P47902 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.88□□□□□ -0.19
CDX1P47902 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.88□□□□□ -0.19
CDX1P47902 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.88□□□□□ -0.19
CDX1P47902 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.88□□□□□ -0.19
CDX1P47902 MIR5100-201ENST00000579544 119 ntBASIC13.88□□□□□ -0.19
CDX1P47902 AL121894.2-201ENST00000602977 491 ntBASIC13.88□□□□□ -0.19
CDX1P47902 AL591684.3-201ENST00000605187 298 ntBASIC13.88□□□□□ -0.19
CDX1P47902 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 AC097374.2-201ENST00000618617 1306 ntBASIC13.88□□□□□ -0.19
CDX1P47902 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CDX1P47902 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.88□□□□□ -0.19
CDX1P47902 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 AC006449.5-201ENST00000610658 2098 ntBASIC13.87□□□□□ -0.19
CDX1P47902 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 TP73-AS1-210ENST00000637775 1455 ntBASIC13.87□□□□□ -0.19
CDX1P47902 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CDX1P47902 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CDX1P47902 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CDX1P47902 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms