Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 AC073621.1-201ENST00000392730 636 ntBASIC15.98■□□□□ 0.15
SOX3P41225 LINC00982-205ENST00000420957 435 ntBASIC15.98■□□□□ 0.15
SOX3P41225 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.98■□□□□ 0.15
SOX3P41225 AC136632.2-201ENST00000512891 861 ntBASIC15.98■□□□□ 0.15
SOX3P41225 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.98■□□□□ 0.15
SOX3P41225 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
SOX3P41225 AC006504.4-201ENST00000592118 1568 ntBASIC15.98■□□□□ 0.15
SOX3P41225 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SOX3P41225 AL139424.1-201ENST00000607572 797 ntBASIC15.98■□□□□ 0.15
SOX3P41225 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
SOX3P41225 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SOX3P41225 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SOX3P41225 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
SOX3P41225 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 AC104109.2-201ENST00000602919 1418 ntBASIC15.97■□□□□ 0.15
SOX3P41225 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.97■□□□□ 0.15
SOX3P41225 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.97■□□□□ 0.15
SOX3P41225 RNA5SP415-201ENST00000517246 115 ntBASIC15.97■□□□□ 0.15
SOX3P41225 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.97■□□□□ 0.15
SOX3P41225 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.97■□□□□ 0.15
SOX3P41225 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.97■□□□□ 0.15
SOX3P41225 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.97■□□□□ 0.15
SOX3P41225 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.97■□□□□ 0.15
SOX3P41225 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 AL135999.2-201ENST00000622438 1686 ntBASIC15.97■□□□□ 0.15
SOX3P41225 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
SOX3P41225 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 AC011270.2-201ENST00000624293 2550 ntBASIC15.97■□□□□ 0.15
SOX3P41225 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.97■□□□□ 0.15
SOX3P41225 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
SOX3P41225 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SOX3P41225 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
SOX3P41225 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
SOX3P41225 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
SOX3P41225 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 AC060834.1-201ENST00000443027 2032 ntBASIC15.96■□□□□ 0.15
SOX3P41225 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.96■□□□□ 0.15
SOX3P41225 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.96■□□□□ 0.15
SOX3P41225 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.96■□□□□ 0.15
SOX3P41225 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.96■□□□□ 0.15
SOX3P41225 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SOX3P41225 AC106730.1-201ENST00000566722 1090 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms