Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCA1P28370 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.32■□□□□ 0.68
SMARCA1P28370 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.32■□□□□ 0.68
SMARCA1P28370 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCA1P28370 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.32■□□□□ 0.68
SMARCA1P28370 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.32■□□□□ 0.68
SMARCA1P28370 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.32■□□□□ 0.68
SMARCA1P28370 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.32■□□□□ 0.68
SMARCA1P28370 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.32■□□□□ 0.68
SMARCA1P28370 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SMARCA1P28370 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SMARCA1P28370 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SMARCA1P28370 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SMARCA1P28370 AC078925.2-201ENST00000624013 1973 ntBASIC19.32■□□□□ 0.68
SMARCA1P28370 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMARCA1P28370 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.31■□□□□ 0.68
SMARCA1P28370 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
SMARCA1P28370 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.31■□□□□ 0.68
SMARCA1P28370 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.31■□□□□ 0.68
SMARCA1P28370 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
SMARCA1P28370 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 AL078644.1-201ENST00000609881 752 ntBASIC19.31■□□□□ 0.68
SMARCA1P28370 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 AL603756.1-201ENST00000606511 2163 ntBASIC19.31■□□□□ 0.68
SMARCA1P28370 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SMARCA1P28370 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.31■□□□□ 0.68
SMARCA1P28370 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SMARCA1P28370 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SMARCA1P28370 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SMARCA1P28370 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.3■□□□□ 0.68
SMARCA1P28370 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SMARCA1P28370 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 AL355306.1-201ENST00000415580 579 ntBASIC19.3■□□□□ 0.68
SMARCA1P28370 AL671277.1-201ENST00000429656 993 ntBASIC19.3■□□□□ 0.68
SMARCA1P28370 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.3■□□□□ 0.68
SMARCA1P28370 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.3■□□□□ 0.68
SMARCA1P28370 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SMARCA1P28370 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
SMARCA1P28370 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.3■□□□□ 0.68
SMARCA1P28370 RARRES2P8-201ENST00000566335 367 ntBASIC19.3■□□□□ 0.68
SMARCA1P28370 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.3■□□□□ 0.68
SMARCA1P28370 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
SMARCA1P28370 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 WASH6P-202ENST00000359512 1437 ntBASIC19.3■□□□□ 0.68
SMARCA1P28370 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.3■□□□□ 0.68
SMARCA1P28370 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.3■□□□□ 0.68
SMARCA1P28370 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
SMARCA1P28370 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SMARCA1P28370 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMARCA1P28370 AC080080.1-201ENST00000625121 2420 ntBASIC19.3■□□□□ 0.68
SMARCA1P28370 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 AC022211.2-201ENST00000585075 2527 ntBASIC19.29■□□□□ 0.68
SMARCA1P28370 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.29■□□□□ 0.68
SMARCA1P28370 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SMARCA1P28370 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMARCA1P28370 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms