Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.96■□□□□ 0.79
HMGB1P09429 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.96■□□□□ 0.79
HMGB1P09429 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.79
HMGB1P09429 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
HMGB1P09429 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGB1P09429 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 AL353732.1-201ENST00000569618 1459 ntBASIC19.95■□□□□ 0.78
HMGB1P09429 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.95■□□□□ 0.78
HMGB1P09429 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
HMGB1P09429 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGB1P09429 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGB1P09429 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGB1P09429 AC005412.3-201ENST00000580309 715 ntBASIC19.95■□□□□ 0.78
HMGB1P09429 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.95■□□□□ 0.78
HMGB1P09429 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGB1P09429 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
HMGB1P09429 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGB1P09429 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HMGB1P09429 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 AC131009.4-201ENST00000624048 1740 ntBASIC19.94■□□□□ 0.78
HMGB1P09429 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HMGB1P09429 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.94■□□□□ 0.78
HMGB1P09429 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGB1P09429 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGB1P09429 MRPL20P1-201ENST00000400819 433 ntBASIC19.94■□□□□ 0.78
HMGB1P09429 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGB1P09429 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.94■□□□□ 0.78
HMGB1P09429 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.94■□□□□ 0.78
HMGB1P09429 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGB1P09429 AL662844.1-201ENST00000546340 181 ntBASIC19.94■□□□□ 0.78
HMGB1P09429 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.94■□□□□ 0.78
HMGB1P09429 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGB1P09429 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.94■□□□□ 0.78
HMGB1P09429 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGB1P09429 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
HMGB1P09429 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGB1P09429 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGB1P09429 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB1P09429 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB1P09429 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB1P09429 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB1P09429 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.93■□□□□ 0.78
HMGB1P09429 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB1P09429 AC093909.1-201ENST00000504731 1122 ntBASIC19.93■□□□□ 0.78
HMGB1P09429 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.93■□□□□ 0.78
HMGB1P09429 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.93■□□□□ 0.78
HMGB1P09429 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGB1P09429 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGB1P09429 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HMGB1P09429 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGB1P09429 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGB1P09429 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.92■□□□□ 0.78
HMGB1P09429 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGB1P09429 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms