Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.22□□□□□ -0.13
ABCA1O95477 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA1O95477 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.22□□□□□ -0.13
ABCA1O95477 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA1O95477 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.22□□□□□ -0.13
ABCA1O95477 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.22□□□□□ -0.13
ABCA1O95477 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
ABCA1O95477 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 AC008894.3-201ENST00000624324 3103 ntBASIC14.22□□□□□ -0.13
ABCA1O95477 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
ABCA1O95477 AC129492.6-201ENST00000611383 1305 ntBASIC14.22□□□□□ -0.13
ABCA1O95477 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
ABCA1O95477 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.22□□□□□ -0.13
ABCA1O95477 AC138969.2-201ENST00000532739 9932 ntBASIC14.21□□□□□ -0.13
ABCA1O95477 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.21□□□□□ -0.13
ABCA1O95477 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 TFAMP1-201ENST00000412727 736 ntBASIC14.21□□□□□ -0.13
ABCA1O95477 FAM58DP-201ENST00000428076 619 ntBASIC14.21□□□□□ -0.13
ABCA1O95477 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.21□□□□□ -0.13
ABCA1O95477 AL592309.1-201ENST00000443127 649 ntBASIC14.21□□□□□ -0.13
ABCA1O95477 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
ABCA1O95477 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.21□□□□□ -0.13
ABCA1O95477 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.21□□□□□ -0.13
ABCA1O95477 ACTL9-202ENST00000612068 1252 ntBASIC14.21□□□□□ -0.13
ABCA1O95477 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.21□□□□□ -0.13
ABCA1O95477 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
ABCA1O95477 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.21□□□□□ -0.13
ABCA1O95477 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.21□□□□□ -0.13
ABCA1O95477 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 AC139713.2-201ENST00000641328 2723 ntBASIC14.21□□□□□ -0.13
ABCA1O95477 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
ABCA1O95477 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC14.21□□□□□ -0.13
ABCA1O95477 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
ABCA1O95477 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
ABCA1O95477 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC14.21□□□□□ -0.14
ABCA1O95477 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
ABCA1O95477 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
ABCA1O95477 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
ABCA1O95477 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.21□□□□□ -0.14
ABCA1O95477 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.21□□□□□ -0.14
ABCA1O95477 IGHV3-52-201ENST00000519770 353 ntBASIC14.21□□□□□ -0.14
ABCA1O95477 AC112191.1-201ENST00000523689 701 ntBASIC14.21□□□□□ -0.14
ABCA1O95477 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.21□□□□□ -0.14
ABCA1O95477 DUX4L27-201ENST00000554796 1261 ntBASIC14.21□□□□□ -0.14
ABCA1O95477 AL135744.1-201ENST00000565098 629 ntBASIC14.21□□□□□ -0.14
ABCA1O95477 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.21□□□□□ -0.14
ABCA1O95477 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
ABCA1O95477 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.21□□□□□ -0.14
ABCA1O95477 AL590787.1-201ENST00000568856 1315 ntBASIC14.2□□□□□ -0.14
ABCA1O95477 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
ABCA1O95477 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 CYP51A1P2-201ENST00000419457 1499 ntBASIC14.2□□□□□ -0.14
ABCA1O95477 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
ABCA1O95477 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.2□□□□□ -0.14
ABCA1O95477 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
ABCA1O95477 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.2□□□□□ -0.14
ABCA1O95477 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.2□□□□□ -0.14
ABCA1O95477 MEIS3P1-201ENST00000495167 958 ntBASIC14.2□□□□□ -0.14
ABCA1O95477 RNA5SP421-201ENST00000516864 134 ntBASIC14.2□□□□□ -0.14
ABCA1O95477 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 MIR4745-201ENST00000577608 62 ntBASIC14.2□□□□□ -0.14
ABCA1O95477 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.2□□□□□ -0.14
ABCA1O95477 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.2□□□□□ -0.14
ABCA1O95477 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ABCA1O95477 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms