Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC23.4■■□□□ 1.34
NPHP4O75161 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC23.4■■□□□ 1.34
NPHP4O75161 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.4■■□□□ 1.34
NPHP4O75161 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC23.4■■□□□ 1.34
NPHP4O75161 USB1-202ENST00000423271 1217 ntTSL 2 BASIC23.4■■□□□ 1.34
NPHP4O75161 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC23.4■■□□□ 1.34
NPHP4O75161 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC23.4■■□□□ 1.34
NPHP4O75161 MIR5189-201ENST00000577370 114 ntBASIC23.4■■□□□ 1.34
NPHP4O75161 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC23.4■■□□□ 1.34
NPHP4O75161 AL021920.2-201ENST00000624828 1351 ntBASIC23.4■■□□□ 1.34
NPHP4O75161 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
NPHP4O75161 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.4■■□□□ 1.34
NPHP4O75161 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
NPHP4O75161 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.34
NPHP4O75161 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC23.39■■□□□ 1.34
NPHP4O75161 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
NPHP4O75161 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
NPHP4O75161 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC23.39■■□□□ 1.34
NPHP4O75161 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
NPHP4O75161 USP49-202ENST00000373010 2446 ntTSL 5 BASIC23.39■■□□□ 1.33
NPHP4O75161 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.39■■□□□ 1.33
NPHP4O75161 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
NPHP4O75161 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
NPHP4O75161 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
NPHP4O75161 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC23.39■■□□□ 1.33
NPHP4O75161 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
NPHP4O75161 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
NPHP4O75161 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC23.39■■□□□ 1.33
NPHP4O75161 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC23.39■■□□□ 1.33
NPHP4O75161 AC243960.2-201ENST00000600996 747 ntBASIC23.39■■□□□ 1.33
NPHP4O75161 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
NPHP4O75161 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.39■■□□□ 1.33
NPHP4O75161 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.39■■□□□ 1.33
NPHP4O75161 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
NPHP4O75161 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NPHP4O75161 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC23.38■■□□□ 1.33
NPHP4O75161 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NPHP4O75161 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 AC005229.1-201ENST00000392885 409 ntBASIC23.38■■□□□ 1.33
NPHP4O75161 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
NPHP4O75161 FO681548.1-201ENST00000455617 1132 ntBASIC23.38■■□□□ 1.33
NPHP4O75161 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC23.38■■□□□ 1.33
NPHP4O75161 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC23.38■■□□□ 1.33
NPHP4O75161 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 PPA1-206ENST00000625364 644 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
NPHP4O75161 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC23.38■■□□□ 1.33
NPHP4O75161 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NPHP4O75161 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
NPHP4O75161 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC23.37■■□□□ 1.33
NPHP4O75161 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC23.37■■□□□ 1.33
NPHP4O75161 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
NPHP4O75161 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
NPHP4O75161 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
NPHP4O75161 FAM21FP-201ENST00000426241 1131 ntBASIC23.37■■□□□ 1.33
NPHP4O75161 WDR53-204ENST00000433160 887 ntTSL 5 BASIC23.37■■□□□ 1.33
NPHP4O75161 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
NPHP4O75161 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC23.37■■□□□ 1.33
NPHP4O75161 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC23.37■■□□□ 1.33
NPHP4O75161 APRT-204ENST00000563655 709 ntTSL 5 BASIC23.37■■□□□ 1.33
NPHP4O75161 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC23.37■■□□□ 1.33
NPHP4O75161 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
NPHP4O75161 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC23.37■■□□□ 1.33
NPHP4O75161 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC23.37■■□□□ 1.33
NPHP4O75161 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
NPHP4O75161 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
NPHP4O75161 AC138028.4-201ENST00000564984 1845 ntBASIC23.37■■□□□ 1.33
NPHP4O75161 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC23.37■■□□□ 1.33
NPHP4O75161 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP4O75161 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP4O75161 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.36■■□□□ 1.33
NPHP4O75161 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
NPHP4O75161 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms