Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDC3O75056 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 SLC22A20-204ENST00000530038 1673 ntBASIC16.5■□□□□ 0.23
SDC3O75056 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
SDC3O75056 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.5■□□□□ 0.23
SDC3O75056 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 PMS2P4-201ENST00000412466 1052 ntBASIC16.5■□□□□ 0.23
SDC3O75056 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.5■□□□□ 0.23
SDC3O75056 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 RNA5SP421-201ENST00000516864 134 ntBASIC16.5■□□□□ 0.23
SDC3O75056 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.5■□□□□ 0.23
SDC3O75056 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.5■□□□□ 0.23
SDC3O75056 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.5■□□□□ 0.23
SDC3O75056 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.5■□□□□ 0.23
SDC3O75056 AC051619.7-201ENST00000568314 623 ntBASIC16.5■□□□□ 0.23
SDC3O75056 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.5■□□□□ 0.23
SDC3O75056 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.5■□□□□ 0.23
SDC3O75056 AP001059.3-201ENST00000619053 235 ntBASIC16.5■□□□□ 0.23
SDC3O75056 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.5■□□□□ 0.23
SDC3O75056 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.5■□□□□ 0.23
SDC3O75056 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SDC3O75056 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 AC107890.1-201ENST00000422478 521 ntBASIC16.49■□□□□ 0.23
SDC3O75056 AC055876.3-201ENST00000431496 288 ntBASIC16.49■□□□□ 0.23
SDC3O75056 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.49■□□□□ 0.23
SDC3O75056 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.49■□□□□ 0.23
SDC3O75056 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 AC008677.1-201ENST00000519230 1561 ntBASIC16.49■□□□□ 0.23
SDC3O75056 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.49■□□□□ 0.23
SDC3O75056 SLC25A39P2-201ENST00000537614 270 ntBASIC16.49■□□□□ 0.23
SDC3O75056 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.49■□□□□ 0.23
SDC3O75056 AC026150.2-201ENST00000564693 1156 ntBASIC16.49■□□□□ 0.23
SDC3O75056 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
SDC3O75056 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 AL031055.1-201ENST00000606362 631 ntBASIC16.49■□□□□ 0.23
SDC3O75056 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 AC138649.4-201ENST00000612222 287 ntBASIC16.49■□□□□ 0.23
SDC3O75056 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SDC3O75056 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.49■□□□□ 0.23
SDC3O75056 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SDC3O75056 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SDC3O75056 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.49■□□□□ 0.23
SDC3O75056 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.49■□□□□ 0.23
SDC3O75056 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SDC3O75056 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SDC3O75056 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SDC3O75056 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
SDC3O75056 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms