Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 KRT89P-201ENST00000620027 1478 ntBASIC16.95■□□□□ 0.3
SHOX2O60902 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.95■□□□□ 0.3
SHOX2O60902 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.95■□□□□ 0.3
SHOX2O60902 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.95■□□□□ 0.3
SHOX2O60902 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.95■□□□□ 0.3
SHOX2O60902 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.95■□□□□ 0.3
SHOX2O60902 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.95■□□□□ 0.3
SHOX2O60902 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHOX2O60902 LINC01101-201ENST00000622953 1884 ntBASIC16.95■□□□□ 0.3
SHOX2O60902 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.95■□□□□ 0.3
SHOX2O60902 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.94■□□□□ 0.3
SHOX2O60902 TSPY20P-201ENST00000450910 630 ntBASIC16.94■□□□□ 0.3
SHOX2O60902 FAM201B-201ENST00000458407 597 ntBASIC16.94■□□□□ 0.3
SHOX2O60902 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.94■□□□□ 0.3
SHOX2O60902 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHOX2O60902 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.94■□□□□ 0.3
SHOX2O60902 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.94■□□□□ 0.3
SHOX2O60902 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.93■□□□□ 0.3
SHOX2O60902 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.93■□□□□ 0.3
SHOX2O60902 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHOX2O60902 CRYGFP-201ENST00000418459 633 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 NUDT16P1-203ENST00000513809 620 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 IGHV3-52-201ENST00000519770 353 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.93■□□□□ 0.3
SHOX2O60902 MIR3917-201ENST00000580971 93 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.93■□□□□ 0.3
SHOX2O60902 AL139011.1-202ENST00000642063 584 ntBASIC16.93■□□□□ 0.3
SHOX2O60902 LINC00528-201ENST00000600723 2160 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms