Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.18■□□□□ 0.02
ZIC3O60481 AL391256.1-201ENST00000443260 1855 ntBASIC15.18■□□□□ 0.02
ZIC3O60481 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.18■□□□□ 0.02
ZIC3O60481 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ZIC3O60481 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.18■□□□□ 0.02
ZIC3O60481 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ZIC3O60481 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ZIC3O60481 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ZIC3O60481 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
ZIC3O60481 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
ZIC3O60481 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.17■□□□□ 0.02
ZIC3O60481 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.17■□□□□ 0.02
ZIC3O60481 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 RNU1-129P-201ENST00000384064 167 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 AC002056.1-201ENST00000395613 760 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 MIR1233-2-201ENST00000408138 82 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 MIR1233-1-201ENST00000408722 82 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 AC092474.2-201ENST00000424288 719 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 AC112191.1-201ENST00000523689 701 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 U1.21-201ENST00000580816 167 ntBASIC15.17■□□□□ 0.02
ZIC3O60481 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
ZIC3O60481 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
ZIC3O60481 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.17■□□□□ 0.02
ZIC3O60481 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ZIC3O60481 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
ZIC3O60481 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.16■□□□□ 0.02
ZIC3O60481 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 SNX33P1-201ENST00000592116 1762 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 AL671710.1-201ENST00000610245 2349 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 ELL2P1-201ENST00000413990 1906 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.16■□□□□ 0.02
ZIC3O60481 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 AP002490.2-201ENST00000524791 560 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.16■□□□□ 0.02
ZIC3O60481 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 MIR4469-201ENST00000583919 79 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 AL009183.1-201ENST00000603760 355 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 GPALPP1-207ENST00000611650 899 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 AC022211.2-201ENST00000585075 2527 ntBASIC15.16■□□□□ 0.02
ZIC3O60481 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
ZIC3O60481 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
ZIC3O60481 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.16■□□□□ 0.02
ZIC3O60481 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms