Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
AP3B1O00203 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
AP3B1O00203 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.12■□□□□ 0.33
AP3B1O00203 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.12■□□□□ 0.33
AP3B1O00203 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 SAPCD2P3-201ENST00000455031 850 ntBASIC17.12■□□□□ 0.33
AP3B1O00203 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.12■□□□□ 0.33
AP3B1O00203 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.12■□□□□ 0.33
AP3B1O00203 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.12■□□□□ 0.33
AP3B1O00203 AC006557.2-201ENST00000592985 1240 ntBASIC17.12■□□□□ 0.33
AP3B1O00203 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.12■□□□□ 0.33
AP3B1O00203 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
AP3B1O00203 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
AP3B1O00203 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
AP3B1O00203 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.12■□□□□ 0.33
AP3B1O00203 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
AP3B1O00203 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.11■□□□□ 0.33
AP3B1O00203 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.11■□□□□ 0.33
AP3B1O00203 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
AP3B1O00203 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.11■□□□□ 0.33
AP3B1O00203 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.11■□□□□ 0.33
AP3B1O00203 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
AP3B1O00203 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.11■□□□□ 0.33
AP3B1O00203 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.11■□□□□ 0.33
AP3B1O00203 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
AP3B1O00203 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
AP3B1O00203 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.11■□□□□ 0.33
AP3B1O00203 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.11■□□□□ 0.33
AP3B1O00203 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP3B1O00203 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP3B1O00203 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.1■□□□□ 0.33
AP3B1O00203 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP3B1O00203 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
AP3B1O00203 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.1■□□□□ 0.33
AP3B1O00203 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
AP3B1O00203 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
AP3B1O00203 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP3B1O00203 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.1■□□□□ 0.33
AP3B1O00203 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.1■□□□□ 0.33
AP3B1O00203 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.1■□□□□ 0.33
AP3B1O00203 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
AP3B1O00203 LAGE3P1-201ENST00000425356 484 ntBASIC17.1■□□□□ 0.33
AP3B1O00203 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.1■□□□□ 0.33
AP3B1O00203 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms