Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CSH2-202ENST00000345366 598 ntTSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL6A5A8TX70 AC005077.2-201ENST00000449786 690 ntBASIC12.92□□□□□ -0.34
COL6A5A8TX70 AC098859.1-201ENST00000502915 1238 ntBASIC12.92□□□□□ -0.34
COL6A5A8TX70 PTK2-225ENST00000520892 571 ntTSL 4 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL6A5A8TX70 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AC234644.1-201ENST00000406065 370 ntBASIC12.91□□□□□ -0.34
COL6A5A8TX70 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 RN7SL720P-201ENST00000488178 304 ntBASIC12.91□□□□□ -0.34
COL6A5A8TX70 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AP000997.3-201ENST00000623333 2250 ntBASIC12.91□□□□□ -0.34
COL6A5A8TX70 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AC131009.4-201ENST00000624048 1740 ntBASIC12.91□□□□□ -0.34
COL6A5A8TX70 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC12.91□□□□□ -0.34
COL6A5A8TX70 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL6A5A8TX70 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC12.91□□□□□ -0.34
COL6A5A8TX70 ABBA01031660.1-201ENST00000635219 756 ntBASIC12.91□□□□□ -0.34
COL6A5A8TX70 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 AL607033.1-201ENST00000623900 1599 ntBASIC12.9□□□□□ -0.34
COL6A5A8TX70 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 DEK-201ENST00000244776 1441 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL6A5A8TX70 MIR326-201ENST00000362220 95 ntBASIC12.9□□□□□ -0.34
COL6A5A8TX70 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.9□□□□□ -0.34
COL6A5A8TX70 Z93015.1-201ENST00000451718 390 ntBASIC12.9□□□□□ -0.34
COL6A5A8TX70 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms