Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.54■□□□□ 0.08
LRFN1Q9P244 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRFN1Q9P244 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
LRFN1Q9P244 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRFN1Q9P244 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRFN1Q9P244 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRFN1Q9P244 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.54■□□□□ 0.08
LRFN1Q9P244 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 AC140658.5-201ENST00000438532 169 ntBASIC15.53■□□□□ 0.08
LRFN1Q9P244 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 AC116353.5-201ENST00000638148 1699 ntBASIC15.53■□□□□ 0.08
LRFN1Q9P244 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRFN1Q9P244 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 AC012569.1-201ENST00000591191 1524 ntBASIC15.53■□□□□ 0.08
LRFN1Q9P244 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
LRFN1Q9P244 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 OR6D1P-203ENST00000641209 4860 ntBASIC15.52■□□□□ 0.08
LRFN1Q9P244 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRFN1Q9P244 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 HMGN1P19-201ENST00000436976 333 ntBASIC15.52■□□□□ 0.08
LRFN1Q9P244 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.52■□□□□ 0.08
LRFN1Q9P244 AC004835.2-201ENST00000603762 682 ntBASIC15.52■□□□□ 0.08
LRFN1Q9P244 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 AL353732.1-201ENST00000569618 1459 ntBASIC15.52■□□□□ 0.07
LRFN1Q9P244 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRFN1Q9P244 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.52■□□□□ 0.07
LRFN1Q9P244 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LRFN1Q9P244 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRFN1Q9P244 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRFN1Q9P244 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRFN1Q9P244 AC068880.1-201ENST00000507289 2297 ntBASIC15.51■□□□□ 0.07
LRFN1Q9P244 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LRFN1Q9P244 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LRFN1Q9P244 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRFN1Q9P244 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRFN1Q9P244 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms