Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.03■□□□□ -0
MMP28Q9H239 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MMP28Q9H239 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.03■□□□□ -0
MMP28Q9H239 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
MMP28Q9H239 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.03■□□□□ -0
MMP28Q9H239 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MMP28Q9H239 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
MMP28Q9H239 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
MMP28Q9H239 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.03■□□□□ -0
MMP28Q9H239 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.02■□□□□ -0
MMP28Q9H239 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
MMP28Q9H239 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
MMP28Q9H239 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.02■□□□□ -0
MMP28Q9H239 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.02■□□□□ -0
MMP28Q9H239 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.02■□□□□ -0
MMP28Q9H239 BX664615.1-201ENST00000443558 458 ntBASIC15.02■□□□□ -0
MMP28Q9H239 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
MMP28Q9H239 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
MMP28Q9H239 SEC1P-202ENST00000473944 940 ntBASIC15.02■□□□□ -0
MMP28Q9H239 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.02■□□□□ -0
MMP28Q9H239 COX11P1-201ENST00000489116 835 ntBASIC15.02■□□□□ -0
MMP28Q9H239 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.02■□□□□ -0
MMP28Q9H239 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.02■□□□□ -0
MMP28Q9H239 AC140113.3-201ENST00000605663 199 ntBASIC15.02■□□□□ -0
MMP28Q9H239 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.02■□□□□ -0
MMP28Q9H239 AC010240.3-201ENST00000607688 395 ntBASIC15.02■□□□□ -0
MMP28Q9H239 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
MMP28Q9H239 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.02□□□□□ -0.01
MMP28Q9H239 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
MMP28Q9H239 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MMP28Q9H239 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MMP28Q9H239 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.02□□□□□ -0.01
MMP28Q9H239 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MMP28Q9H239 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.02□□□□□ -0.01
MMP28Q9H239 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
MMP28Q9H239 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.02□□□□□ -0.01
MMP28Q9H239 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
MMP28Q9H239 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.02□□□□□ -0.01
MMP28Q9H239 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
MMP28Q9H239 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.01□□□□□ -0.01
MMP28Q9H239 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
MMP28Q9H239 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.01□□□□□ -0.01
MMP28Q9H239 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.01□□□□□ -0.01
MMP28Q9H239 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.01□□□□□ -0.01
MMP28Q9H239 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.01□□□□□ -0.01
MMP28Q9H239 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.01□□□□□ -0.01
MMP28Q9H239 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.01□□□□□ -0.01
MMP28Q9H239 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 TNRC18P2-201ENST00000417666 2714 ntBASIC15.01□□□□□ -0.01
MMP28Q9H239 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
MMP28Q9H239 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
MMP28Q9H239 AL024508.2-201ENST00000607749 1894 ntBASIC15.01□□□□□ -0.01
MMP28Q9H239 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.01□□□□□ -0.01
MMP28Q9H239 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
MMP28Q9H239 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms