Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 MIR6787-201ENST00000616675 61 ntBASIC22.13■■□□□ 1.13
ABCA3Q99758 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
ABCA3Q99758 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC22.13■■□□□ 1.13
ABCA3Q99758 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA3Q99758 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
ABCA3Q99758 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA3Q99758 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
ABCA3Q99758 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA3Q99758 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA3Q99758 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.13■■□□□ 1.13
ABCA3Q99758 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC22.12■■□□□ 1.13
ABCA3Q99758 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.12■■□□□ 1.13
ABCA3Q99758 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC22.12■■□□□ 1.13
ABCA3Q99758 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 IGHV3OR16-16-201ENST00000563644 343 ntBASIC22.12■■□□□ 1.13
ABCA3Q99758 MIR5189-201ENST00000577370 114 ntBASIC22.12■■□□□ 1.13
ABCA3Q99758 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
ABCA3Q99758 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
ABCA3Q99758 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
ABCA3Q99758 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
ABCA3Q99758 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA3Q99758 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
ABCA3Q99758 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC22.11■■□□□ 1.13
ABCA3Q99758 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC22.11■■□□□ 1.13
ABCA3Q99758 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC22.11■■□□□ 1.13
ABCA3Q99758 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 PDIA3P1-201ENST00000471856 1510 ntBASIC22.11■■□□□ 1.13
ABCA3Q99758 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
ABCA3Q99758 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC22.11■■□□□ 1.13
ABCA3Q99758 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
ABCA3Q99758 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 DPM2-202ENST00000373110 738 ntTSL 2 BASIC22.11■■□□□ 1.13
ABCA3Q99758 MIR1908-201ENST00000410394 80 ntBASIC22.11■■□□□ 1.13
ABCA3Q99758 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC22.11■■□□□ 1.13
ABCA3Q99758 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC22.11■■□□□ 1.13
ABCA3Q99758 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC22.11■■□□□ 1.13
ABCA3Q99758 AC068587.10-201ENST00000641210 219 ntBASIC22.11■■□□□ 1.13
ABCA3Q99758 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC22.11■■□□□ 1.13
ABCA3Q99758 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
ABCA3Q99758 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA3Q99758 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC22.1■■□□□ 1.13
ABCA3Q99758 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC22.1■■□□□ 1.13
ABCA3Q99758 AL671710.1-201ENST00000610245 2349 ntBASIC22.1■■□□□ 1.13
ABCA3Q99758 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
ABCA3Q99758 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC22.1■■□□□ 1.13
ABCA3Q99758 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC22.1■■□□□ 1.13
ABCA3Q99758 AC092933.1-201ENST00000393644 945 ntBASIC22.1■■□□□ 1.13
ABCA3Q99758 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC22.1■■□□□ 1.13
ABCA3Q99758 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC22.1■■□□□ 1.13
ABCA3Q99758 AC013467.2-201ENST00000605472 835 ntBASIC22.1■■□□□ 1.13
ABCA3Q99758 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 ABALON-201ENST00000629058 1903 ntBASIC22.1■■□□□ 1.13
ABCA3Q99758 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC22.1■■□□□ 1.13
ABCA3Q99758 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.1■■□□□ 1.13
ABCA3Q99758 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA3Q99758 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC22.09■■□□□ 1.13
ABCA3Q99758 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC22.09■■□□□ 1.13
ABCA3Q99758 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC22.09■■□□□ 1.13
ABCA3Q99758 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC22.09■■□□□ 1.13
ABCA3Q99758 BOLA2P3-201ENST00000404566 256 ntBASIC22.09■■□□□ 1.13
ABCA3Q99758 SPDYE17-201ENST00000412399 783 ntBASIC22.09■■□□□ 1.13
ABCA3Q99758 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC22.09■■□□□ 1.13
ABCA3Q99758 AC024267.1-201ENST00000582320 895 ntBASIC22.09■■□□□ 1.13
ABCA3Q99758 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC22.09■■□□□ 1.13
ABCA3Q99758 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC22.09■■□□□ 1.13
ABCA3Q99758 PC-204ENST00000524491 1714 ntTSL 2 BASIC22.09■■□□□ 1.13
ABCA3Q99758 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA3Q99758 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms