Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.52■□□□□ 0.23
VPS13AQ96RL7 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 AC105021.1-202ENST00000570572 669 ntBASIC16.51■□□□□ 0.23
VPS13AQ96RL7 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VPS13AQ96RL7 AL671710.1-201ENST00000610245 2349 ntBASIC16.51■□□□□ 0.23
VPS13AQ96RL7 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 FOS-206ENST00000555347 1280 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 CETN4P-206ENST00000642099 2168 ntBASIC16.5■□□□□ 0.23
VPS13AQ96RL7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AC108725.1-201ENST00000495472 409 ntBASIC16.5■□□□□ 0.23
VPS13AQ96RL7 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.5■□□□□ 0.23
VPS13AQ96RL7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 MIR1247-201ENST00000408206 136 ntBASIC16.49■□□□□ 0.23
VPS13AQ96RL7 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 AC098818.2-201ENST00000564925 2320 ntBASIC16.49■□□□□ 0.23
VPS13AQ96RL7 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 AC044860.1-202ENST00000559481 777 ntBASIC16.49■□□□□ 0.23
VPS13AQ96RL7 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.49■□□□□ 0.23
VPS13AQ96RL7 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 C2orf69P2-201ENST00000562032 1123 ntBASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
VPS13AQ96RL7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms