Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 AC012615.1-201ENST00000565797 1299 ntBASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 AC073592.4-201ENST00000623827 446 ntBASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 AL590326.2-201ENST00000625139 305 ntBASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 AP000550.4-202ENST00000639755 178 ntBASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 AC079776.2-201ENST00000641154 1609 ntBASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ATG4AQ8WYN0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 AC132872.4-202ENST00000622924 2756 ntBASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 AP002414.1-201ENST00000391405 1147 ntBASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 POM121L3P-201ENST00000419331 1163 ntBASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 AP002490.2-201ENST00000524791 560 ntBASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 MIR5100-201ENST00000579544 119 ntBASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ATG4AQ8WYN0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATG4AQ8WYN0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.58■□□□□ 0.41
ATG4AQ8WYN0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.58■□□□□ 0.41
ATG4AQ8WYN0 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ATG4AQ8WYN0 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ATG4AQ8WYN0 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 AC069148.1-201ENST00000608741 768 ntBASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.58■□□□□ 0.4
ATG4AQ8WYN0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms