Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 AL035252.4-201ENST00000624174 288 ntBASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 TOP3BP1-201ENST00000420768 1380 ntBASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.96■□□□□ 0.31
HDDC3Q8N4P3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HDDC3Q8N4P3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 TFAMP1-201ENST00000412727 736 ntBASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 KRT8P48-201ENST00000515599 1220 ntBASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 AC093520.2-201ENST00000561830 333 ntBASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 LTB4R2-202ENST00000528054 3092 ntBASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HDDC3Q8N4P3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 HCG4-201ENST00000418983 998 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 BASP1P1-201ENST00000430708 665 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AC005237.2-201ENST00000434368 219 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CNN2P2-201ENST00000443536 909 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CNN2P3-201ENST00000450201 906 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AL136317.3-201ENST00000618497 906 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AF228730.6-201ENST00000641497 218 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AC084121.3-201ENST00000641716 218 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AC105233.6-201ENST00000642093 218 ntBASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
HDDC3Q8N4P3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms