Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 AC105339.1-204ENST00000636249 355 ntBASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 AC092068.3-201ENST00000587894 2016 ntBASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SH3RF1Q7Z6J0 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SH3RF1Q7Z6J0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 FRMD8P1-201ENST00000440433 1524 ntBASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 KLF4P1-201ENST00000412782 1185 ntBASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 AL805961.1-202ENST00000641562 540 ntBASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 AL118508.1-201ENST00000613502 2345 ntBASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.35■□□□□ 0.69
SH3RF1Q7Z6J0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 RNF216P1-203ENST00000404404 2427 ntBASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AC078925.2-201ENST00000624013 1973 ntBASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 PTCHD3P3-201ENST00000403073 906 ntBASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 AC069262.1-201ENST00000539058 672 ntBASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.34■□□□□ 0.69
SH3RF1Q7Z6J0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms